Index of /orozcolab/SNP2Mechanism/PsA_cleaned_analysis/HiC_allelic_imbalance/


 

  
   

    [ICO]
    Name
    Last modified
    Size
   

  
  


 [DIR]
 Parent Directory
  
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 [DIR]
 figures
 11-Jul-2023 09:49 
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 [DIR]
 preprocessing_scripts
 11-Jul-2023 09:49 
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 [   ]
 aggregated_data_CD4_slop10kb_separatepval.pk
 11-Jul-2023 09:49 
 1.0G




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 aggregated_data_CD8_slop10kb_separatepval.pk
 11-Jul-2023 09:49 
 1.2G




 [   ]
 allelic_imbalanced_loops_CD4.bedpe
 11-Jul-2023 09:49 
 1.1M




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 allelic_imbalanced_loops_CD4.longrange.gz
 11-Jul-2023 09:49 
  77K




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 allelic_imbalanced_loops_CD4.longrange.gz.tbi
 11-Jul-2023 09:49 
  31K




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 allelic_imbalanced_loops_CD8.bedpe
 11-Jul-2023 09:49 
 1.1M




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 allelic_imbalanced_loops_CD8.longrange.gz
 11-Jul-2023 09:49 
  80K




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 allelic_imbalanced_loops_CD8.longrange.gz.tbi
 11-Jul-2023 09:49 
  32K




 [   ]
 ldtrait_CD4.csv
 11-Jul-2023 09:49 
  83K




 [   ]
 ldtrait_CD4_all.csv
 11-Jul-2023 09:49 
 588K




 [   ]
 ldtrait_CD8.csv
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  96K




 [   ]
 ldtrait_CD8_all.csv
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 428K




 [   ]
 loop_anchors_merged.bed
 11-Jul-2023 09:49 
 1.3M




 [   ]
 output_dataframe_CD4.csv
 11-Jul-2023 09:49 
 1.2M




 [   ]
 output_dataframe_CD8.csv
 11-Jul-2023 09:49 
 1.2M




 [   ]
 1_retrieve_loop_counts.py
 11-Jul-2023 09:49 
 2.8K




 [   ]
 2_aggregate_p_val.py
 11-Jul-2023 09:49 
 7.0K




 [   ]
 3_filter_loops.ipynb
 11-Jul-2023 09:49 
  22K




 [   ]
 4_check_CTCF_overlaps.ipynb
 11-Jul-2023 09:49 
  56K


  
 

 
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